PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03326g02004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 499aa    MW: 55734.4 Da    PI: 5.1402
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03326g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.61.5e-36171092103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+y++++d+++++++sws++ nsfvv++  efa++vLpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F
  Niben101Scf03326g02004.1  17 FLSKTYDMVNDPSTDSVVSWSKSHNSFVVWNVPEFARDVLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGF 92 
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                +g+k+ll++i r+k +
  Niben101Scf03326g02004.1  93 LRGHKHLLKSISRRKPS 109
                               **************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.7E-408101IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3512106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-6113106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-191740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-3217106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MDCVHENTAV GNSPPPFLSK TYDMVNDPST DSVVSWSKSH NSFVVWNVPE FARDVLPKYF  60
KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGHKHLL KSISRRKPSQ VQGHQQTTSQ  120
VQNASVGSCV EVGKFGIEDE VERLKRDKDV LMQELELVEL KQQQQATDHQ MQTVGQRVQL  180
MEKRQQQMMS FLAKAMQSPG FVAQLVHQQN GNNRRIAGMN KKRRLPDHDE ENVAGNPVNM  240
SRDGQIVRYQ PSMNEAAKAL LRQILKINTP GRLDNRLKNT NDLLTDNPLS PKNALSGDTS  300
SRISGVTLSE VLSMSSQSHI MSDSGFPFTS CSSVMSESQS STTVVPGEAK VPKLPETDAL  360
NSLTDHDLPE FSQEQRINRQ ETFGITGLKR SETGNVPYID NTQAILDGVT AIAPDGFSAD  420
TYVDILLDDV PKLPAINDIF WDQILSASPL TGDTDEIGME DGLEKEEDFL GVQENDLDKL  480
NHMCHLTEQM GLLSSAAQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-261510627129Heat shock factor protein 1
5d5v_B1e-261510627129Heat shock factor protein 1
5d5v_D1e-261510627129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465973.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-152HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLM0ZU870.0M0ZU87_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000081990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-126heat shock factor 3